NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE79696 Query DataSets for GSE79696
Status Public on Sep 06, 2016
Title Circadian Epigenomic Control of Skeletal Muscle Fuel Metabolism by HDAC3
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary We address the function of HDAC3 in skeletal muscle metabolism
 
Overall design We performed HDAC3 ChIP-seq, RNA-seq, and GRO-seq in mouse muscles at different times of the day and compared between WT and HDAC3-depleted muscles.
 
Contributor(s) Sun Z, Fang B, Damle M
Citation(s) 27991918
Submission date Mar 29, 2016
Last update date May 15, 2019
Contact name Bin Fang
E-mail(s) binfang@mail.med.upenn.edu
Organization name University of Pennsylvania
Lab Mitch Lazar
Street address 3400 Civic Center Blvd, Bldg 42
City Philadelphia
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (14)
GSM2101245 HDAC3 ChIP-seq at ZT10 (Wild Type)
GSM2101246 HDAC3 ChIP-seq at ZT22 (Wild Type)
GSM2101247 HDAC3 ChIP-seq at ZT10 (HDAC3 Knock-out)
Relations
BioProject PRJNA316721
SRA SRP072516

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79696_RAW.tar 1.0 Gb (http)(custom) TAR (of BED, BIGWIG)
GSE79696_WT_vs_HDAC3KO_rest_cuffdiff_gene_exp_diff.txt.gz 657.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap