|
| Status |
Public on Oct 13, 2016 |
| Title |
Loss of CREBBP results in gene expression repression in lymphoma cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
KD of CREBBP at lymphoma cell line, MD901, results in reduced expression
|
| |
|
| Overall design |
Genome-wide profiling of total RNA transcript levels in human cell line MD901 (CREBBP wild type) with shCREBBP and scramble control.
|
| |
|
| Contributor(s) |
Jiang Y, Geng H, Melnick A |
| Citation(s) |
27733359 |
| |
| Submission date |
Mar 29, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Huimin Geng |
| E-mail(s) |
huimin.geng@ucsf.edu
|
| Organization name |
UCSF
|
| Department |
Department of Laboratory Medicine
|
| Street address |
513 Parnassus Ave., MSB S-1480
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (12)
|
| GSM2101125 |
MD901 cells with shCREBBP.1027, replicate 1 |
| GSM2101126 |
MD901 cells with shCREBBP.1027, replicate 2 |
| GSM2101127 |
MD901 cells with shCREBBP.1027, replicate 3 |
| GSM2101128 |
MD901 cells with shCREBBP.3753, replicate 1 |
| GSM2101129 |
MD901 cells with shCREBBP.3753, replicate 2 |
| GSM2101130 |
MD901 cells with shCREBBP.3753, replicate 3 |
| GSM2101131 |
MD901 cells with shCREBBP.572, replicate 1 |
| GSM2101132 |
MD901 cells with shCREBBP.572, replicate 2 |
| GSM2101133 |
MD901 cells with shCREBBP.572, replicate 3 |
| GSM2101134 |
MD901 cells with scramble shRNA control, replicate 1 |
| GSM2101135 |
MD901 cells with scramble shRNA control, replicate 2 |
| GSM2101136 |
MD901 cells with scramble shRNA control, replicate 3 |
|
| This SubSeries is part of SuperSeries: |
| GSE79686 |
Loss of CREBBP results in H3K27Ac loss at enhancers and gene expression repression in lymphoma cells |
|
| Relations |
| BioProject |
PRJNA316707 |
| SRA |
SRP072506 |
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