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Series GSE79673 Query DataSets for GSE79673
Status Public on Aug 31, 2017
Title Transcriptional profiles of stomach organoids from human embryonic stem cells.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Gastric ulcer, which affect many of patients and is deeply related with gastric cancer, is caused by chronic gastric acid stimulation. Stomach fundus, the main body of stomach, is a major source of gastric acid and peptidase for food digestion. Recapturing the main body of stomach requires mainly 3 functionally differentiated cells; parietal (oxyntic) cells, chief (zymogenic) cells, and surface mucous foveolar (pit) cells. We have previously shown the induction of stomach tissue with functional secreting activities by directed differentiation of mouse embryonic stem cells (ES cells) to stomach primordium with both gut epithelium and splanchnic mesoderm. However, generating human stomach with fundus and such functions has been elucidated and a long-desired goal. Here, we describe the method for establishing human embryonic stem cell-derived stomach organoids with fundus gland structure. Along with mouse stomach development and de novo stomach generation from mouse ES cells in vitro, we observed gut-like structure formation from human embryonic stem cells by induction of both endoderm and mesoderm. These human embryonic gut could differentiate into stomach primordium by growth factor stimulation as well as stomach development, and form stomach tissue in three-dimensional organoid culture. Furthermore, these stomach organoids contain fundus-like gland with parietal cells and chief cells, some of secreting activities, and is transcriptionally close to human stomach. Human functional stomach derived from embryonic stem cells represent powerful tools for analying human stomach development, and gastric ulcer related disease including gastric tumorgenesis.
 
Overall design We generated arrays from stomach organoids derived from human embryonic stem cells.
 
Contributor(s) Noguchi TK
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Submission date Mar 29, 2016
Last update date Sep 01, 2017
Contact name Takaaki K Noguchi
Organization name The University of Tsukuba
Department Life and environmental sciences
Lab Laboratory of cell and tissue regenerative engineering
Street address Tennoudai-1-1-1
City Tsukuba city
State/province Ibaraki prefecture
ZIP/Postal code 305-8577
Country Japan
 
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (2)
GSM2100964 Stomach Organoids day 28
GSM2100965 Stomach Organoids day 56
Relations
BioProject PRJNA316678

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79673_RAW.tar 6.1 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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