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Series GSE79638 Query DataSets for GSE79638
Status Public on Jul 01, 2016
Title Arid3a is required for mammalian placenta development
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Previous studies in the mouse indicated that Arid3a plays a critical role in the first cell fate decision required for generation of trophectoderm (TE). Here, we demonstrate that Arid3a is widely expressed during mouse and human placentation and essential for early embryonic viability. Arid3a is located within trophoblast giant cells and other trophoblast-derived cell subtypes in the junctional and labyrinth zones of the placenta. Conventional Arid3a knockout embryos suffer restricted intrauterine growth with sever defects in placental structural organization. Arid3a null placentas show aberrant expression of subtype-specific markers as well as significant alteration in inflammatory response-related genes, cytokines and chemokines. We provide evidence that BMP4-mediated induction of trophoblast stem (TS)-like cells from human induced pluripotent (iPS) stem cells results in ARID3A upregulation and cytoplasmic to nuclear translocation. Overexpression of ARID3A in human iPS and BMP4-mediated TS-like cells up-regulated TE markers, whereas pluripotent markers were down-regulated. Our results indicate that the roles of Arid3a are conserved and essential for mammalian placental development through regulation of both intrinsic and extrinsic developmental programs.
 
Overall design Placentas of E10.5 and E11.5 wild type (WT) and Arid3a-/- mice were generated by deep sequencing, using Illumina
 
Contributor(s) Tucker H
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Submission date Mar 28, 2016
Last update date May 15, 2019
Contact name David T Scadden
E-mail(s) dscadden@mgh.harvard.edu
Organization name MGH
Department Center for Regenerative Medicine
Street address 185 Cambridge St
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2100280 WT E10.5
GSM2100281 Arid3a-/- E10.5 rep1
GSM2100282 Arid3a-/- E10.5 rep2
Relations
BioProject PRJNA316574
SRA SRP072420

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79638_RAW.tar 3.1 Mb (http)(custom) TAR (of DIFF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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