NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE78953 Query DataSets for GSE78953
Status Public on Mar 07, 2016
Title RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391)
Organism Populus trichocarpa
Experiment type Expression profiling by high throughput sequencing
Summary We transformed Populus trichocarpa and generated transgenics with knockdown or overexpression of monolignol genes and transcription factors
 
Overall design RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa. 378 samples.
 
Contributor(s) Chiang VL
Citation(s) 29679008, 32275650, 33425249
Submission date Mar 07, 2016
Last update date Jan 19, 2021
Contact name Vincent L Chiang
E-mail(s) vchiang@ncsu.edu
Organization name North Carolina State University
Department Forestry and Environmental Resources
Lab Forest Biotechnology Group
Street address 840 Main Campus Drive
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platforms (2)
GPL17415 Illumina HiSeq 2000 (Populus trichocarpa)
GPL17579 Illumina Genome Analyzer IIx (Populus trichocarpa)
Samples (378)
GSM2081649 NSF1_a1-1-1
GSM2081650 NSF1_a1-1-2
GSM2081651 NSF1_a1-1-3
Relations
BioProject PRJNA314500
SRA SRP071226

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78953_NSF_all_RNAseq_result.txt.gz 17.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap