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| Status |
Public on Feb 15, 2019 |
| Title |
Longitudinal transcriptome profiling of post-treatment Lyme disease syndrome |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Most Lyme disease patients treated with appropriate antibiotics recover rapidly and completely, but a minority of patients develop persistent symptoms correlating with disseminated disease, a greater severity of illness at presentation, and delayed antibiotic therapy. When lingering or recurrent symptoms are associated with a functional decline and persist for greater than 6 months, patients are considered to meet clinical criteria for post-treatment Lyme disease syndrome (PTLDS), although the exact molecular mechanisms underlying this condition remain unknown. We performed longitudinal whole transcriptome sequencing of PTLDS patients' immune cells. No immune mechanism specific to PTLDS were uncovered to date.
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| Overall design |
Gene expression profile from peripheral mononuclear blood cells (PBMC) of PTLDS patients was undertaken. Seven Lyme disease patients were sampled at 3 time points: acute Lyme pre-treatment (V1), 3 weeks later, immediately following completion of a standard course of antibiotics (V2), and 6 months following treatment completion (V5). Total RNA was extracted from 10e7 PBMC, followed by mRNA purification, paired-end barcode library preparation and sequencing on an Illumina HiSeq 2000.
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| Contributor(s) |
Bouquet J, Chiu CY |
| Citation missing |
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| |
| Submission date |
Feb 15, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Charles Chiu |
| E-mail(s) |
charles.chiu@ucsf.edu
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| Organization name |
University of California, San Francisco
|
| Department |
Laboratory Medicine
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| Lab |
Chiu Laboratory
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| Street address |
185 Berry Street, Box 0134
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143-0134 |
| Country |
USA |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA312122 |
| SRA |
SRP070649 |
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