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Series GSE77855 Query DataSets for GSE77855
Status Public on Jul 24, 2016
Title HP1BP3, a chromatin retention factor for co-transcriptional microRNA processing (miRNA-Seq)
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Identification and characterization of HP1BP3 (a human histone H1 homologue) as a novel chromatin retention factor essential for the co-transcriptional processing of pri-miRNA.
 
Overall design Compare global miRNA expression profile between control sample and sample depleted of HP1BP3
 
Contributor(s) Liu H, Kollipara RK, Kittler R, Liu Q
Citation(s) 27425409
Submission date Feb 11, 2016
Last update date May 15, 2019
Contact name Ralf Kittler
E-mail(s) Ralf.Kittler@UTSouthwestern.edu
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province Texas
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM2060553 siBP3 rep1
GSM2060554 siBP3 rep2
GSM2060555 Ctrl rep1
This SubSeries is part of SuperSeries:
GSE77856 HP1BP3, a chromatin retention factor for co-transcriptional microRNA processing
Relations
BioProject PRJNA311742
SRA SRP069980

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77855_cpm_annotated_miRNA.xls.gz 21.5 Kb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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