NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE77693 Query DataSets for GSE77693
Status Public on Aug 01, 2016
Title Loss of Trex1 in dendritic cells is sufficient to trigger systemic autoimmunity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Biallelic defects of the gene encoding for the intracellular enzyme 3’ repair exonuclease (Trex)1 cause Aicardi-Goutières syndrome (AGS), a rare monogenic, lupus-like autoimmune disease, while heterozygous Trex1 loss of function alleles are associated with systemic lupus erythematosus (SLE). Trex1-/- mice develop lethal autoimmune multi-organ inflammation, which results from a chronic type I IFN response triggered by intracellular accumulation of a putative nucleic acid substrate of Trex1. This pathogenic nucleic acid is detected by the broadly, but not ubiquitously, expressed cytosolic DNA sensor cGAS, raising the question whether there are specific cell types that respond to Trex1 deficiency by production of IFN and induce autoimmunity. We generated mice with conditional knock out of the Trex1 gene and demonstrated that loss of Trex1 throughout the hematopoietic system and even selective loss in dendritic cells is sufficient to cause IFN release and autoimmunity. B cells showed no transcriptional response to Trex1 deficiency. Trex1-/- keratinocytes produced IFN but did not induce skin inflammation, whereas loss of Trex1 in cardiomyocytes triggered neither IFN response nor pathology. Trex1-deficient neurons and astrocytes did not release IFN in the CNS. In contrast, mice with selective inactivation of Trex1 in long-living CNS macrophages such as microglia locally produced IFN but did not reproduce the mild encephalitis seen in Trex1-/- mice. Collectively, individual cell types differentially respond to the loss of Trex1 and dendritic cells seem promising candidates for experiments addressing the molecular pathomechanism in Trex1 deficiency.
 
Overall design We sorted CD19-positive B cells from spleens of Trex1fl/fl CD19-Cre+ and Trex1fl/fl CD19-Cre- mice and isolated total RNA for library construction to perform mRNA deep sequencing.
 
Contributor(s) Peschke K, Lesche M, Dahl A, Roers A, Behrendt R
Citation(s) 27511730
Submission date Feb 08, 2016
Last update date May 15, 2019
Contact name Axel Roers
E-mail(s) Axel.Roers@med.uni-heidelberg.de
Organization name Heidelberg University Hospital
Department Institute of Immunology
Lab Roers Lab
Street address Im Neuenheimer Feld 305
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2056275 Trex1fl/fl CD19-Cre- repl1
GSM2056276 Trex1fl/fl CD19-Cre+ repl1
GSM2056277 Trex1fl/fl CD19-Cre+ repl2
Relations
BioProject PRJNA311280
SRA SRP069804

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77693_deseq.comparison.csv.gz 2.3 Mb (ftp)(http) CSV
GSE77693_featureCounts.mm10.e75.csv.gz 2.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap