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| Status |
Public on Mar 30, 2016 |
| Title |
RNA-seq transcriptonal profiling in partial hepatectomy liver tissues in Arid1a WT and liver specific KO mice. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Arid1a is the subunit of SWI/SNF complex, which was reported to guide SWI/SNF to DNA. Here, we found that loss of Arid1a in the liver results in improved liver regeneration after partial hepatectomy.Genome-wide analysis showed that after hepatectomy,loss of Arid1a reduces the recruitment and activity of E2F4 on target promoters, resulting in expression programs that favor regeneration during injury.RNAseq shows transcriptional profiling in WT and Arid1a LKO livers pre- and post-hepatectomy, which confirmed the E2F4 target genes and cell cycle genes were upregulated after hepatectomy.
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| Overall design |
After partial hepatectomy, liver transcriptional profiling in WT and Arid1a liver specific KO mice were generated by RNA-seq analysis.
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| Contributor(s) |
Sun X, Xing C, Kanchwala M, Liang H, Zhu H |
| Citation(s) |
27044474 |
| |
| Submission date |
Jan 15, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Xuxu Sun |
| Organization name |
shanghai jiao tong university
|
| Department |
school of medicine
|
| Street address |
227 south chongqing road
|
| City |
shanghai |
| ZIP/Postal code |
200025 |
| Country |
China |
| |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE76935 |
Suppression of SWI/SNF component Arid1a promotes mammalian regeneration through chromatin remodeling |
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| Relations |
| BioProject |
PRJNA308950 |
| SRA |
SRP068517 |
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