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Series GSE76539 Query DataSets for GSE76539
Status Public on Apr 21, 2016
Title AF9/MLLT3 ChIP-Seq in LPS-stimulated RAW264.7 cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We sought to characterize the genomic localization of the YEATS domain protein AF9 in the macrophage-like cell line RAW 264.7 +/- LPS stimulation and +/- sodium crotonate pretreatment. We performed chromatin immunoprecipitation followed by massively parallel sequencing (ChIP-seq) for endogenous AF9 or for a FLAG-tagged AF9 transgene in RAW264.7 or a RAW264.7 cell line engineered to express FLAG-AF9, respectively.
Overall design ChIP-Seq for AF9 in RAW264.7 cells +/- LPS stimulation and +/- sodium crotonate pretreatment
Contributor(s) Sabari BR
Citation(s) 27105114
Submission date Jan 05, 2016
Last update date May 15, 2019
Contact name Benjamin Sabari
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM2027628 AF9_unstimulated
GSM2027629 AF9_LPS
GSM2027630 input_DNA_unstimulated
BioProject PRJNA307672
SRA SRP068100

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76539_RAW.tar 2.6 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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