|
| Status |
Public on Apr 21, 2016 |
| Title |
AF9/MLLT3 ChIP-Seq in LPS-stimulated RAW264.7 cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We sought to characterize the genomic localization of the YEATS domain protein AF9 in the macrophage-like cell line RAW 264.7 +/- LPS stimulation and +/- sodium crotonate pretreatment. We performed chromatin immunoprecipitation followed by massively parallel sequencing (ChIP-seq) for endogenous AF9 or for a FLAG-tagged AF9 transgene in RAW264.7 or a RAW264.7 cell line engineered to express FLAG-AF9, respectively.
|
| |
|
| Overall design |
ChIP-Seq for AF9 in RAW264.7 cells +/- LPS stimulation and +/- sodium crotonate pretreatment
|
| |
|
| Contributor(s) |
Sabari BR |
| Citation(s) |
27105114 |
| |
| Submission date |
Jan 05, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Benjamin Sabari |
| E-mail(s) |
Benjamin.Sabari@UTSouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (10)
|
|
| Relations |
| BioProject |
PRJNA307672 |
| SRA |
SRP068100 |
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