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Series GSE76217 Query DataSets for GSE76217
Status Public on Mar 02, 2016
Title RNA-SEQ on resting (R) and stimulated (S) B cells from several IgH 3'RR mutant models
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We evaluated by RNA-seq obveral transcripts in B cells (resting and activated for 2 days with LPS) sorted from several KO mice models devoid of portion or all the IgH 3' Regulatory Region
Overall design One RNA-seq point was realized per condition (resting or stimulated) and per genotype. Each point corresponds to a pool of equivalent number of B cells sorted from 4 animals
Contributor(s) Pinaud E, Denizot Y, Magnone V, Lebrigand K, Barbry P
Citation(s) 26831080
Submission date Dec 21, 2015
Last update date May 15, 2019
Contact name Kevin Lebrigand
Organization name IPMC/CNRS
Lab Functional Genomics Platform of Nice-Sophia-Antipolis, France.
Street address 660 route des lucioles
City Valbonne - Sophia-Antipolis
ZIP/Postal code 06560
Country France
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM1976948 3B4-R
GSM1976949 3B4-S
GSM1976950 3pRR-R
BioProject PRJNA306658
SRA SRP067646

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76217_RAW.tar 1.6 Gb (http)(custom) TAR (of BW)
GSE76217_featurecounts_table.txt.gz 2.6 Mb (ftp)(http) TXT
GSE76217_kallisto_estcounts_table.txt.gz 3.6 Mb (ftp)(http) TXT
GSE76217_kallisto_tpm_table.txt.gz 3.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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