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Series GSE74763 Query DataSets for GSE74763
Status Public on May 03, 2016
Title Detection of Alzheimer’s Disease at Mild Cognitive Impairment and Disease Progression Using Autoantibodies as Blood-based Biomarkers
Organism Homo sapiens
Experiment type Protein profiling by protein array
Summary Human serum samples from Alzheimer's disease driven mild cognitive impairment and non-diseased controls were probed onto human protein microarrays in order to identify differentially expressed autoantibody biomarkers that could be used as diagnostic indicators. Other neurodegenerative and non-neurodegenerative diseases were also used to help measure the specificity of the selected biomarkers.
 
Overall design In the study presented here, 50 Alzheimer's disease driven mild cognitive impairment samples and 50 control human serum samples were probed onto human protein microarrays in order to identify differentially expressed autoantibodies. Microarray data was analyzed using several statistical significance algorithms, and autoantibodies that demonstrated significant differences in group prevelance were selected as potential biomarkers of disease. Prediction classification analysis using Invitrogen's Prospector v5.2.1 and Random Forest tested the diagnostic efficacy of the identified biomarkers. Differentiation of mild cognitive impairment samples from other neurodegenerative and non-neurodegenerative controls (Parkinson's disease, multiple sclerosis, and breast cancer) assessed the specificity of the selected biomarkers, while comparison with mild-moderate Alzheimer's disease samples assessed their utility for use in disease staging.
contributor: Alzheimer's Disease Neuroimagining Initiative
 
Contributor(s) Nagele RG, DeMarshall C, Sarkar A, Acharya NK, Godsey G, Goldwaser EL, Nagele EP, Kosciuk M, Thayasivam U, Han M, Belinka B
Citation(s) 27239548
Submission date Nov 06, 2015
Last update date Aug 04, 2016
Contact name Robert G Nagele
E-mail(s) nagelero@rowan.edu
Phone 856-566-6083
Organization name UMDNJ-SOM
Department NJISA
Lab Nagele
Street address 2 Medical Center Drive
City Stratford
State/province NJ
ZIP/Postal code 08084
Country USA
 
Platforms (1)
GPL13669 Invitrogen ProtoArray v5.0
Samples (236)
GSM1931847 Mild Cognitive Impairment Sample EMCI 1
GSM1931848 Mild Cognitive Impairment Sample EMCI 2
GSM1931849 Mild Cognitive Impairment Sample EMCI 3
Relations
BioProject PRJNA301443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74763_RAW.tar 620.4 Mb (http)(custom) TAR (of GPR)
GSE74763_processed_data.xls.gz 81.0 Mb (ftp)(http) XLS
Processed data are available on Series record

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