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Series GSE74361 Query DataSets for GSE74361
Status Public on Dec 15, 2015
Title Inhibiting Fungal Multidrug Resistance by Disrupting an Activator-Mediator Interaction With the Small Molecule iKIX1
Organisms Saccharomyces cerevisiae; Nakaseomyces glabratus
Experiment type Expression profiling by high throughput sequencing
Summary Eukaryotic transcription activators stimulate the expression of specific sets of target genes through recruitment of co-activators such as the RNA polymerase II-interacting Mediator complex. We previously identified an activator-targeted ~85 amino acid three-helix bundle KIX domain in the human MED15 Mediator subunit that is structurally conserved in Gal11 Mediator subunits in fungi. The Gal11 KIX domain is engaged by pleiotropic drug resistance transcription factor (Pdr1) orthologues, key regulators of the multidrug resistance (MDR) pathway in S. cerevisiae and in the clinically important human pathogen Candida glabrata. Drug-resistant clinical isolates of C. glabrata most commonly harbour point mutations in Pdr1 that render it constitutively active, suggesting that this transcriptional activation pathway may represent a lynchpin in C. glabrata MDR. We have now carried out sequential biochemical and in vivo high-throughput screens to identify small molecule inhibitors of the interaction of the C. glabrata Pdr1 activation domain with the C. glabrata Gal11A KIX domain. The lead compound (iKIX1) inhibits Pdr1-dependent gene activation in both S. cerevisiae and C. glabrata and re-sensitizes drug-resistant C. glabrata to effective azole antifungal concentrations in vitro and in animal models for disseminated and urinary tract C. glabrata infection.
 
Overall design Samples are generated in triplicate for four conditions (DMSO/vehicle-treated, iKIX1-treated, DMSO/vehicle and ketoconazole-treated. and iKIX1-ketoconazole treated) in both Saccharomyces cerevisiae and Candida glabrata
 
Contributor(s) Nishikawa JL, Naar AM, Ji F, Sadreyev RI
Citation(s) 26886795
Submission date Oct 26, 2015
Last update date May 15, 2019
Contact name Joy Luz Nishikawa
Organization name Massachusetts General Hospital / Harvard Medical School
Department Cancer Center / Cell Biology
Lab Anders Naar
Street address Bldg 149, 13th Street
City Charlestown
State/province MA
ZIP/Postal code 02129
Country USA
 
Platforms (2)
GPL17342 Illumina HiSeq 2500 (Saccharomyces cerevisiae)
GPL21066 Illumina HiSeq 2500 (Candida glabrata)
Samples (24)
GSM1918909 SC_D_rep1
GSM1918910 SC_D_rep2
GSM1918911 SC_D_rep3
Relations
BioProject PRJNA299815
SRA SRP065276

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74361_RAW.tar 710.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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