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Series GSE74235 Query DataSets for GSE74235
Status Public on Oct 21, 2016
Title Hydroxychloroquine inhibits responses to group A streptococcus in peripheral blood mononuclear cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Immune responses to group A streptococcus in humans can lead to the development of acute rheumatic fever and rheumatic heart disease. Immune pathways that are activated by group A streptococcus are potential targets for inhibiting autoimmune responses to group A streptococcus. This experiment tests the impact of the drug hydroxychloroquine on immune responses to group A streptococcus in peripheral blood mononuclear cells
 
Overall design Peripheral blood mononuclear cells from three healthy participants were stimulated with rheumatogenic, heat-killed group A streptococcus for 24 hours, MOI 10. The effect of hydroxychloroquine (20 µM) (HCQ) was measured, both alone and in combination with group A streptococcus (GAS).
 
Contributor(s) Martin W, Pacini G, Smyth GK
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 21, 2015
Last update date May 15, 2019
Contact name Gordon K Smyth
E-mail(s) smyth@wehi.edu.au
Phone (+61 3) 9345 2326
Fax (+61 3) 9347 0852
URL http://www.wehi.edu.au
Organization name Walter and Eliza Hall Institute of Medical Research
Department Bioinformatics
Lab Smyth
Street address 1G Royal Pde
City Parkville
State/province Vic
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (15)
GSM1915090 Untreated 0h Patient 2
GSM1915091 HCQ 24h Patient 2
GSM1915092 Untreated 24h Patient 1
Relations
BioProject PRJNA299596
SRA SRP065194

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74235_GAS_HCQ_GenewiseCounts.txt.gz 593.3 Kb (ftp)(http) TXT
GSE74235_RAW.tar 2.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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