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Series GSE73632 Query DataSets for GSE73632
Status Public on Oct 01, 2015
Title Comparative analysis of Rtf1- and PAF1C-regulated genes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Paf1 and Ski8 were selected as representative subunits of the Paf1 complex (PAF1C), and RNA-seq analysis was performed in triplicate to compare the genes affected by Paf1, Ski8, and Rtf1 knockdown in HeLa cells.
Overall design Total RNA was harvested from control HeLa and Ski8 knockdown cells at day 4 and from Rtf1 or Paf1 knockdown cells at day 7 and was subjected to RNA-seq in triplicates.
Contributor(s) Cao Q, Yamamoto J, Isobe T, Tateno S, Murase Y, Chen Y, Handa H, Yamaguchi Y
Citation(s) 26217014, 26518638
Submission date Sep 30, 2015
Last update date May 15, 2019
Contact name Yuki Yamaguchi
Organization name Tokyo Institute of Technology
Department Life Science and Technology
Street address 4259 Nagatsuta
City Yokohama
ZIP/Postal code 226-8501
Country Japan
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (12)
GSM1899789 WT_rep1
GSM1899790 WT_rep2
GSM1899791 WT_rep3
BioProject PRJNA297458
SRA SRP064356

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE73632_rpkm_matrix.xlsx 2.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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