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| Status |
Public on Nov 10, 2015 |
| Title |
Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver [RNASeq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Diurnal oscillations of gene expression are a hallmark of rhythmic physiology across most living organisms. Such oscillations are controlled by the interplay between the circadian clock and feeding rhythms. While rhythmic mRNA accumulation has been extensively studied, comparatively less is known about their transcription and translation. Here, we quantified simultaneously temporal transcription, accumulation, and translation of mouse liver mRNAs under physiological light-dark conditions and ad libitum or night-restricted feeding in wild-type and Bmal1 deficient animals. We found that rhythmic transcription predominantly drives rhythmic mRNA accumulation and translation for a majority of genes. Comparison of wild-type and Bmal1 KO mice shows that circadian clock and feeding rhythms have broad impact on rhythmic genes expression, Bmal1 deletion having surprisingly more impact at the post-transcriptional level. Translation efficiency is differentially regulated during the diurnal cycle for genes with 5’-TOP sequences and for genes involved in mitochondrial activity and harboring a TISU motif. The increased translation efficiency of 5’-TOP and TISU genes is mainly driven by feeding rhythms but Bmal1 deletion impacts also amplitude and phase of translation, including TISU genes. Together this study emphasizes the complex interconnections between circadian and feeding rhythms at several steps ultimately determining rhythmic gene expression and translation.
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| Overall design |
RNA-Seq from total RNA of mouse liver during the dirunal cycle. Time-series mRNA profiles of wild type (WT) and Bmal -/- mice under ad libitum and night restriced feeding regimen were generated by deep sequencing.
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| Contributor(s) |
Atger F, Gobet C, Marquis J, Martin E, Marquis J, Weger B, Lefebvre G, Descombes P, Naef F, Gachon F |
| Citation(s) |
26554015, 28475894 |
| |
| Submission date |
Sep 29, 2015 |
| Last update date |
Jul 06, 2021 |
| Contact name |
Frédéric Gachon |
| E-mail(s) |
frederic.gachon@uq.edu.au
|
| Phone |
+41 791926057
|
| Organization name |
University Of Queensland
|
| Department |
Institute for Molecular Bioscience
|
| Street address |
306 Carmody Road
|
| City |
St Lucia |
| State/province |
QLD |
| ZIP/Postal code |
4072 |
| Country |
Australia |
| |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (84)
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| This SubSeries is part of SuperSeries: |
| GSE73554 |
Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver |
|
| Relations |
| BioProject |
PRJNA297287 |
| SRA |
SRP064298 |
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