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Series GSE73090 Query DataSets for GSE73090
Status Public on Jun 14, 2016
Title An improved method for the isolation of endometrial epithelial and stromal cells from the total hysterectomy specimen
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We aimed to improve the efficiency of isolating endometrial epithelial and stromal cells (EMECs and EMSCs) from hysterectomy specimens. We revealed by immunohistochemical staining that the large tissue fragments remaining after collagenase treatment, which are usually discarded after the first filtration in the conventional protocol, consisted of glandular epithelial and stromal cells. Therefore, we established protease-treatment and cell suspension conditions to dissociate single cells from the tissue fragments, and isolated epithelial (EPCAM-positive) and stromal (CD13-positive) cells by fluorescence-activated cell sorting. Four independent experiments showed that, on average, 1.2 x 10^6 of EMECs and 2.8 x 10^6 EMSCs were isolated from one hysterectomy specimen. We confirmed that the isolated cells presented transcriptomic features highly similar to those of epithelial and stromal cells obtained by the conventional method. Our improved protocol facilitates future studies to better understand the epigenetic regulation underlying the dynamic changes of the endometrium during the menstrual cycle.
 
Overall design Although protocols for the isolation of endometrial stromal and epithelial cells (EMSCs and EMECs) have been well established, the number of EMECs obtainable by the current protocols is relatively small. To improve the efficiency of isolating EMECs as well as EMSCs from endometrial tissues, we established protease-treatment and cell suspension conditions to efficiently dissociate single cells from endometrial tissue fragments, and isolated epithelial (EPCAM-positive) and stromal (CD13-positive) cells by fluorescence-activated cell sorting. By conducting a microarray-based transcriptome analysis, we confirmed that the cells isolated by the modified protocol developed in this study maintain the transcriptomic properties of endometrial epithelial and stromal cells.
 
Contributor(s) Masuda A, Nakabayashi K, Hata K, Tomikawa J
Citation(s) 26853786
Submission date Sep 16, 2015
Last update date Oct 11, 2016
Contact name Kazuhiko Nakabayashi
E-mail(s) nakabaya-k@ncchd.go.jp
Organization name National Research Institute for Child Health and Development
Department Department of Maternal-Fetal Biology
Street address 2-10-1 Okura
City Setagaya
State/province Tokyo
ZIP/Postal code 157-8535
Country Japan
 
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (11)
GSM1885268 Endometrial-stromal-cells_0625_secretory_conventional
GSM1885269 Endometrial-stromal-cells_0206_proliferative_conventional
GSM1885270 Endometrial-stromal-cells_1008_proliferative_conventional
Relations
BioProject PRJNA296044

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE73090_RAW.tar 134.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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