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Series GSE72625 Query DataSets for GSE72625
Status Public on Sep 02, 2015
Title Gastrointestinal symptoms and pathology in patients with Common variable immunodeficiency
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Based on the findings of increased IEL in duodenal biopsies in CVID, an overlap with celiac disease has been suggested. In the present study, increased IEL, in particular in the pars descendens of the duodenum, was one of the most frequent histopathological finding. We therefore examined the gene expression profile in pars descendens of duodenum in CVID patients with increased IEL (n=12, IEL mean 34 [range 22-56] IEL/100 EC), CVID with normal levels of IEL (n=8), celiac disease (n=10, Marsh grade 3a or above) and healthy controls (n=17) by gene expression microarray
 
Overall design GI histopathological findings in 53 CVID patients that underwent upper and lower endoscopic examination were addressed. For the microarray analysis 20 CVID (8 CVID_normal and 12 CVID with incresed IEL), 10 patients with celiac diseases and 17 healthy controls were included.
 
Contributor(s) Jørgensen SF
Citation(s) 27527747
Submission date Sep 02, 2015
Last update date Aug 13, 2018
Contact name Silje Fjellgård Jørgensen
Organization name Oslo University Hospital
Department Research institute of internal medicine
Street address Postboks 4950 Nydalen
City Oslo
ZIP/Postal code 0424
Country Norway
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (47)
GSM1866896 CVID_IEL (GI_1107)
GSM1866897 CVID_normal (GI_1180)
GSM1866898 CVID_IEL (GI_1203)
Relations
BioProject PRJNA294507

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72625_RAW.tar 26.2 Mb (http)(custom) TAR
GSE72625_non-normalized_data.txt.gz 13.8 Mb (ftp)(http) TXT
GSE72625_supplementary_tables.txt.zip.gz 355.5 Kb (ftp)(http) ZIP
Processed data included within Sample table

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