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| Status |
Public on Dec 22, 2017 |
| Title |
Next Generation Sequencing Facilitates Quantitative Analysis of subcutaneous tumors untreated and treated with doxycycline for 4h to activate shST18 |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report the transcriptome profiling (RNAseq) in hepatoblast-derived tumors, without (untreated) or with ST18 knockdown (4h Doxy) (three independent samples for each condition). We find that ST18 knockdown in hepatoblast-derived tumors affects inflammation-associated genes.
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| |
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| Overall design |
Tumors mRNA profiles of untreated or with 4h Doxy (ST18 knockdown) mice were generated by deep sequencing, in triplicate, using Illumina.
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| |
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| Contributor(s) |
Morelli MJ |
| Citation(s) |
27859418 |
| |
| Submission date |
Aug 26, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Marco J. Morelli |
| E-mail(s) |
Marco.Morelli@iit.it
|
| Organization name |
Istituto Italiano di Tecnologia
|
| Department |
Center for Genomic Science of IIT@SEMM
|
| Street address |
via Adamello 16
|
| City |
Milan |
| ZIP/Postal code |
20139 |
| Country |
Italy |
| |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (6)
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|
| Relations |
| BioProject |
PRJNA293975 |
| SRA |
SRP062868 |
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