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Series GSE72268 Query DataSets for GSE72268
Status Public on Nov 20, 2016
Title Reprogramming postnatal human epidermal keratinocytes toward functional neural crest fates
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary During development, neural crest cells are induced by signaling events at the neural plate border of all vertebrate embryos. Initially arising within the central nervous system, NC cells subsequently undergo an epithelial to mesenchymal transition to migrate into the periphery, where they differentiate into diverse cell types. Here we provide evidence that postnatal human epidermal keratinocytes, in response to FGF2 and IGF1 signals, can be reprogrammed toward a neural crest fate. Genome-wide transcriptome analyses show that keratinocyte-derived NC cells are similar to those derived from human embryonic stem cells. Moreover, they give rise in vitro and in vivo to neural crest derivatives such as peripheral neurons, melanocytes, Schwann cells and mesenchymal cells (osteocytes, chondrocytes, adipocytes and smooth muscle). By demonstrating that human KRT14+ keratinocytes can form neural crest cells, even from clones of single cells, our results have important implications in stem cell biology and regenerative medicine.
 
Overall design mRNA profiles of KC and KC derived NC (from 3 biological replicates) were generated by deep sequencing using Illumina HiSeq 2500 platform (pair-end (2x50 bp) rapid run mode).
 
Contributor(s) Andreadis ST
Citation(s) 28142205
Submission date Aug 21, 2015
Last update date May 15, 2019
Contact name Stelios T Andreadis
E-mail(s) sandread@buffalo.edu
Organization name University at Buffalo
Department Chemical & Biological Engineering
Lab Bioengineering laboratory
Street address 908 Furnas Hall
City AMHERST
State/province NY
ZIP/Postal code 14260
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (6)
GSM1859138 KC1
GSM1859139 KC2
GSM1859140 KC3
Relations
BioProject PRJNA293555
SRA SRP062714

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72268_RAW.tar 490.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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