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| Status |
Public on Aug 06, 2015 |
| Title |
Expression data from Arabidopsis during de-etiolation |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Arabidopsis fc2-1 mutants fail to properly de-etiolate after a prolonged period in the dark. Our goal was to monitor whole genome expression during the first 2 hours of de-etiolation to determine the cuase of this growth arrest.
In comparison with other mutants that also affect de-etiolation, we identified a subset of genes specifically regulated by FC2 function during de-etiolation.
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| Overall design |
Seedlings were grown in the dark for 4 days and then exposed to white light for 30 or 120 minutes to initiate de-etiolation and photomorphogenesis
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| Contributor(s) |
Woodson J, Chory J |
| Citation(s) |
26494759, 34281507 |
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| Submission date |
Aug 05, 2015 |
| Last update date |
Jul 28, 2021 |
| Contact name |
Jesse Daniel Woodson |
| E-mail(s) |
woodson@salk.edu
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| Phone |
608-469-4138
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| Organization name |
The Salk Institute
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| Department |
Plant Biology
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| Lab |
Joanne Chory
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| Street address |
10010 N. Torrey Pines Rd.
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (24)
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| GSM1844764 |
fc2 at T0, biological rep2 |
| GSM1844765 |
flu at T0, biological rep1 |
| GSM1844766 |
flu at T0, biological rep2 |
| GSM1844767 |
fc1 at T0, biological rep1 |
| GSM1844768 |
fc1 at T0, biological rep2 |
| GSM1844769 |
wt at T1, biological rep1 |
| GSM1844770 |
wt at T1, biological rep2 |
| GSM1844771 |
fc2 at T1, biological rep1 |
| GSM1844772 |
fc2 at T1, biological rep2 |
| GSM1844773 |
flu at T1, biological rep1 |
| GSM1844774 |
flu at T1, biological rep2 |
| GSM1844775 |
fc1 at T1, biological rep1 |
| GSM1844776 |
fc1 at T1, biological rep2 |
| GSM1844777 |
wt at T2, biological rep1 |
| GSM1844778 |
wt at T2, biological rep2 |
| GSM1844779 |
fc2 at T2, biological rep1 |
| GSM1844780 |
fc2 at T2, biological rep2 |
| GSM1844781 |
flu at T2, biological rep1 |
| GSM1844782 |
flu at T2, biological rep2 |
| GSM1844783 |
fc1 at T2, biological rep1 |
| GSM1844784 |
fc1 at T2, biological rep2 |
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| Relations |
| BioProject |
PRJNA292026 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE71764_RAW.tar |
50.1 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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