|
| Status |
Public on Mar 17, 2016 |
| Title |
Comparing regeneration and fibrosis using Acomys and Mus |
| Organisms |
Acomys cahirinus; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This project is designed to find differentially expressed genes between regeneration and fibrosis in Acomys (regenerator) and Mus (non-regenerator)
|
| |
|
| Overall design |
A 4mm biopsy punch was made in the ears of 15 animals in each species (30 animals total). Tissue was collected at 5 times points, (D0,D5,D10,D15,D20) post injury from 3 mice of each species. 2 species * 5 time points * 3 animals per time point * triplicate runs per sample * paired-end reads = 180 raw data files
|
| |
|
| Contributor(s) |
Seifert A, Biswas S, Smith J |
| Citation(s) |
27109826, 28508748 |
| Submission date |
Aug 05, 2015 |
| Last update date |
Sep 25, 2019 |
| Contact name |
Ashley Seifert |
| E-mail(s) |
awseifert@uky.edu
|
| Organization name |
University of Kentucky
|
| Department |
Biology
|
| Street address |
675 Rose St.
|
| City |
Lexington |
| State/province |
Kentucky |
| ZIP/Postal code |
40508 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL20776 |
Illumina HiSeq 2000 (Acomys cahirinus) |
|
| Samples (10)
|
| GSM1844717 |
D0 uninjured ear tissue Acomys cahirinus |
| GSM1844718 |
D5 regenerating ear tissue Acomys cahirinus |
| GSM1844719 |
D10 regenerating ear tissue Acomys cahirinus |
| GSM1844720 |
D15 regenerating ear tissue Acomys cahirinus |
| GSM1844721 |
D20 regenerating ear tissue Acomys cahirinus |
| GSM1844722 |
D0 uninjured ear tissue Mus musculus |
| GSM1844723 |
D5 fibrotic ear tissue Mus musculus |
| GSM1844724 |
D10 fibrotic ear tissue Mus musculus |
| GSM1844725 |
D15 fibrotic ear tissue Mus musculus |
| GSM1844726 |
D20 fibrotic ear tissue Mus musculus |
|
| Relations |
| BioProject |
PRJNA292021 |
| SRA |
SRP062073 |
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