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Series GSE71028 Query DataSets for GSE71028
Status Public on Dec 02, 2015
Title Molecular distinctions between proprioceptors supplying Tibialis anterior (TA) and Gastrocnemius (GS) muscles [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Muscle-specific populations of proprioceptive sensory neurons form selective connections with spinal motor neurons, implying the existence of molecular distinctions between proprioceptor subpopulations. Here, we compare the gene expression profiles of proprioceptors that supply an antagonistic muscle pair functioning at a single hindlimb joint.
 
Overall design TA and GS muscles in a Pv::YFP reporter line were injected at p0 with ctb-555; retrogradely labeled proprioceptors were manually isolated at p1 and pooled to form 25-30 neuron samples.
 
Contributor(s) Poliak S, Norovich A, Jessell T
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 17, 2015
Last update date May 15, 2019
Contact name Sebastian Poliak
Organization name Columbia University
Department Neuroscience and Biochemistry and Molecular Biophysics
Lab Thomas Jessell
Street address 701 West 168st
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM1825724 GS biological rep1 (rna-seq)
GSM1825725 GS biological rep2 (rna-seq)
GSM1825726 GS biological rep3 (rna-seq)
This SubSeries is part of SuperSeries:
GSE71029 Molecular distinctions between proprioceptors supplying Tibialis anterior (TA) and Gastrocnemius (GS) muscles
Relations
BioProject PRJNA290148
SRA SRP061260

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71028_TA_GS_rpkm6samples.txt.gz 1.5 Mb (ftp)(http) TXT
GSE71028_seq_TAvsGS_GS_up.txt.gz 23.1 Kb (ftp)(http) TXT
GSE71028_seq_TAvsGS_TA_up.txt.gz 27.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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