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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 20, 2017 |
| Title |
Small RNA sequencing analysis for male germ cells during spermatogenesis |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Small RNAs in FACS-purified spermatogonia, spermatocytes (L/Z and P/D) and round spermatids were sequenced to study piRNA populations.
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| Overall design |
Small RNAs in FACS-purified spermatogonia, spermatocytes (L/Z and P/D) and round spermatids were sequenced to study piRNA populations.
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| Contributor(s) |
Inoue K, Ichiyanagi K |
| Citation(s) |
28749988 |
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| Submission date |
Jul 14, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Kota Inoue |
| E-mail(s) |
inoue@bioreg.kyushu-u.ac.jp
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| Phone |
+8192-642-6760
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| Organization name |
Kyushu University
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| Department |
Medical Institute of Bioregulation
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| Lab |
Division of Epigenomics and Development
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| Street address |
3-1-1 Maidashi, Higashiku
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| City |
Fukuoka |
| ZIP/Postal code |
812-8582 |
| Country |
Japan |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL18480 |
Illumina HiSeq 1500 (Mus musculus) |
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| Samples (13)
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| GSM1821382 |
small_RNA_seq: leptotene/zygotene, biological replicate 1 |
| GSM1821383 |
small_RNA_seq: leptotene/zygotene, biological replicate 2 |
| GSM1821384 |
small_RNA_seq: pachytene/diptotene |
| GSM1821385 |
small_RNA_seq: round spermatids |
| GSM1821386 |
small_RNA_seq: spermatogonia |
| GSM2080810 |
small_RNA_seq: leptotene/zygotene, biological replicate 1, technical replicate 1 |
| GSM2080811 |
small_RNA_seq: leptotene/zygotene, biological replicate 2, technical replicate 1 |
| GSM2080812 |
small_RNA_seq: spermatogonia, biological replicate 1, technical replicate 1 |
| GSM2080813 |
small_RNA_seq: spermatogonia, biological replicate 2, technical replicate 1 |
| GSM2080814 |
small_RNA_seq: leptotene/zygotene, biological replicate 1, technical replicate 2 |
| GSM2080815 |
small_RNA_seq: leptotene/zygotene, biological replicate 2, technical replicate 2 |
| GSM2080816 |
small_RNA_seq: spermatogonia, biological replicate 1, technical replicate 2 |
| GSM2080817 |
small_RNA_seq: spermatogonia, biological replicate 2, technical replicate 2 |
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| This SubSeries is part of SuperSeries: |
| GSE70891 |
The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells |
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| Relations |
| BioProject |
PRJNA289873 |
| SRA |
SRP061096 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70890_RAW.tar |
202.9 Mb |
(http)(custom) |
TAR (of CSV, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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