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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 20, 2017 |
| Title |
Gene and retrotransposon expression analysis for WT, Pld6 KO, and Dnmt3l KO male germ cells during spermatogenesis |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
mRNA sequencing analysis of P0 testes and FACS-purified leptotene/zygotene (L/Z) spermatocytes
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| Overall design |
Compare transcriptomes of WT, Pld6 KO, and Dnmt3l KO germ cells to study the effects of these mutations affecting piRNA biogenesis and DNA methylation, respectively.
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| Contributor(s) |
Inoue K, Ichiyanagi K |
| Citation(s) |
28749988 |
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| Submission date |
Jul 14, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Kota Inoue |
| E-mail(s) |
inoue@bioreg.kyushu-u.ac.jp
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| Phone |
+8192-642-6760
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| Organization name |
Kyushu University
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| Department |
Medical Institute of Bioregulation
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| Lab |
Division of Epigenomics and Development
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| Street address |
3-1-1 Maidashi, Higashiku
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| City |
Fukuoka |
| ZIP/Postal code |
812-8582 |
| Country |
Japan |
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| Platforms (1) |
| GPL18480 |
Illumina HiSeq 1500 (Mus musculus) |
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| Samples (17)
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| GSM1821365 |
Spermatocyte_mRNA_seq: WT, biological replicate 1 |
| GSM1821366 |
Spermatocyte_mRNA_seq: WT, biological replicate 2 |
| GSM1821367 |
Spermatocyte_mRNA_seq: Pld6 KO, biological replicate 1 |
| GSM1821368 |
Spermatocyte_mRNA_seq: Pld6 KO, biological replicate 2 |
| GSM1821369 |
Spermatocyte_mRNA_seq: Dnmt3L KO, biological replicate 1 |
| GSM1821370 |
Spermatocyte_mRNA_seq: Dnmt3L KO, biological replicate 2 |
| GSM1821371 |
P0testis_mRNA_seq: WT, biological replicate 1 |
| GSM1821372 |
P0testis_mRNA_seq: WT, biological replicate 2 |
| GSM1821373 |
P0testis_mRNA_seq: Pld6 KO, biological replicate 1 |
| GSM1821374 |
P0testis_mRNA_seq: Pld6 KO, biological replicate 2 |
| GSM1821375 |
P0testis_mRNA_seq: Pld6 KO, biological replicate 3 |
| GSM1821376 |
P0testis_mRNA_seq: Pld6 KO, biological replicate 4 |
| GSM1821377 |
P0testis_mRNA_seq: Dnmt3L KO, biological replicate 1 |
| GSM1821378 |
P0testis_mRNA_seq: Dnmt3L KO, biological replicate 2 |
| GSM1821379 |
P0testis_mRNA_seq: DKO, biological replicate 1 |
| GSM1821380 |
P0testis_mRNA_seq: DKO, biological replicate 2 |
| GSM1821381 |
P0testis_mRNA_seq: DKO, biological replicate 3 |
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| This SubSeries is part of SuperSeries: |
| GSE70891 |
The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells |
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| Relations |
| BioProject |
PRJNA289871 |
| SRA |
SRP061095 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70889_genes.read_group_tracking_LZ_spermatocyte.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE70889_genes.read_group_tracking_P0_testes.txt.gz |
2.9 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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