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Series GSE70889 Query DataSets for GSE70889
Status Public on Jul 20, 2017
Title Gene and retrotransposon expression analysis for WT, Pld6 KO, and Dnmt3l KO male germ cells during spermatogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary mRNA sequencing analysis of P0 testes and FACS-purified leptotene/zygotene (L/Z) spermatocytes
Overall design Compare transcriptomes of WT, Pld6 KO, and Dnmt3l KO germ cells to study the effects of these mutations affecting piRNA biogenesis and DNA methylation, respectively.
Contributor(s) Inoue K, Ichiyanagi K
Citation(s) 28749988
Submission date Jul 14, 2015
Last update date May 15, 2019
Contact name Kota Inoue
Phone +8192-642-6760
Organization name Kyushu University
Department Medical Institute of Bioregulation
Lab Division of Epigenomics and Development
Street address 3-1-1 Maidashi, Higashiku
City Fukuoka
ZIP/Postal code 812-8582
Country Japan
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (17)
GSM1821365 Spermatocyte_mRNA_seq: WT, biological replicate 1
GSM1821366 Spermatocyte_mRNA_seq: WT, biological replicate 2
GSM1821367 Spermatocyte_mRNA_seq: Pld6 KO, biological replicate 1
This SubSeries is part of SuperSeries:
GSE70891 The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells
BioProject PRJNA289871
SRA SRP061095

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70889_genes.read_group_tracking_LZ_spermatocyte.txt.gz 1.5 Mb (ftp)(http) TXT
GSE70889_genes.read_group_tracking_P0_testes.txt.gz 2.9 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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