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Series GSE70351 Query DataSets for GSE70351
Status Public on Jun 27, 2015
Title Oncogene-dependent regulation of tumor cells via stromal reciprocal signalling
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cancer is a heterocellular disease composed of tumor cells and stromal cells. Although stromal cells are known to regulate cancer progression, oncogene-dependent signalling through heterocellular cancer systems remains poorly elucidated. Here, we describe KRASG12D-dependent ‘reciprocal’ signalling across tumor and stromal Pancreatic Ductal Adenocarcinoma (PDA) cells. Heterocellular multivariate phosphoproteomics demonstrates how an oncogenic cue (KRASG12D), a trans-cellular signal (SHH), and stromal cells drive a reciprocal response in tumor cells. KRASG12D-dependent reciprocal signalling regulates the tumor cell phosphoproteome, total proteome, and mitochondria activity via an IGFR1/AXL-AKT axis. The reciprocal KRASG12D signalling state requires a heterocellular context and is unreachable by cell-autonomous oncogenic KRAS alone. These findings provide evidence that oncogenic KRAS regulates tumor cells via heterocellular reciprocation.
 
Overall design Comparison between FACS resolved iKRAS cells (previously in co-culture with PSCs) pertubed with a SHH antibody
 
Contributor(s) Tape CJ, Ling S, Worboys JD, Leong HS, McMahon KM, Norrie IC, Miller CJ, Lauffenburger DA, Jørgensen C
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Submission date Jun 27, 2015
Last update date May 15, 2019
Contact name Hui Sun Leong
E-mail(s) HuiSun.Leong@cruk.manchester.ac.uk
Organization name Cancer Research UK Manchester Institute
Department The University of Manchester
Lab Computational Biology Support Team
Street address Wilmslow Road
City Manchester
ZIP/Postal code M20 4BX
Country United Kingdom
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM1724256 ikras_shh_minus_rep1
GSM1724257 ikras_shh_minus_rep2
GSM1724258 ikras_shh_minus_rep3
Relations
BioProject PRJNA288372
SRA SRP059937

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70351_RPKM_values.txt.gz 1.9 Mb (ftp)(http) TXT
GSE70351_Raw_read_counts.txt.gz 992.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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