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Series GSE69472 Query DataSets for GSE69472
Status Public on Aug 01, 2015
Title RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ
Organisms Saccharomyces cerevisiae; Homo sapiens
Experiment type Other
Summary Proof-of-concept of a new method involving the limited digestion and subsequent ligation of intramolecular RNA structures in situ followed by deep sequencing
Overall design Proof-of-concept of RPL in S. cerevisiae and H. sapiens tissue culture
Contributor(s) Shendure J, Ramani V
Citation(s) 26237516
Submission date Jun 02, 2015
Last update date May 15, 2019
Contact name Vijay Ramani
Organization name UCSF
Department Biochemistry & Biophysics
Lab Ramani Lab
Street address 600 16th St, GH-S312B
City San Francisco
State/province California
ZIP/Postal code 94143
Country USA
Platforms (5)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL17143 Illumina MiSeq (Saccharomyces cerevisiae)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (13)
GSM1701702 RPL_yeast_ligase
GSM1701703 RPL_yeast_ligase_rep2
GSM1701704 RPL_yeast_noligase
BioProject PRJNA285680
SRA SRP058976

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69472_RAW.tar 12.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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