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Series GSE68783 Query DataSets for GSE68783
Status Public on Jan 04, 2016
Title Genome-wide mapping of Nup98HoxA9- and Crm1-binding sites in ES cell lines.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We used ChIP-seq to examine the genome-wide binding of Nup98-HoxA9 and Crm1 in ES cells. Our analysis revealed that Nup98-HoxA9 is highly and preferentially targeted to specific chromatin sites, particularly near Hox cluster regions where the export factor Crm1 is originally prebound.
Overall design chromatin immunoprecipitation
Contributor(s) Oka M, Yoneda Y, Maehara K, Hirata S, Ohkawa Y
Citation(s) 26740045
BioProject PRJDB3867
Submission date May 12, 2015
Last update date May 15, 2019
Contact name Masahiro Oka
Organization name National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN)
Lab Laboratory of Nuclear Transport Dynamics
Street address 7-6-8 Saito-Asagi
City Ibaraki
State/province Osaka
ZIP/Postal code 567-0085
Country Japan
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (10)
GSM1681241 Parental ES / INPUT
GSM1681242 Nup98HoxA9 ES / INPUT
GSM1681243 Nup98HoxA9 ES TSA-treated / INPUT

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68783_RAW.tar 1.2 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file

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