|
| Status |
Public on Sep 03, 2015 |
| Title |
RNAseq and Lariat sequencing of different S. pombe growth conditions |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
We performed lariat sequencing to profile the diversity of spliced RNA lariats in S. pombe identify annotated and alternate introns.
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| |
|
| Overall design |
Three different growth conditions were used to grow S. pombe wt and S. pombe Δdbr1. Lariat sequencing of the Δdbr1 strains and RNAseq of the wt and Δdbr1 strains were done to profile intron lariats and exon-exon junctions in RNA transcripts.
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| |
|
| Contributor(s) |
Stepankiw N, Fogarty E, Grimson A, Pleiss J |
| Citation(s) |
26261211 |
| |
| Submission date |
Apr 28, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Jeffrey A Pleiss |
| E-mail(s) |
jpleiss@cornell.edu
|
| Organization name |
Cornell University
|
| Department |
Molecular Biology and Genetics
|
| Street address |
451 Biotech
|
| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL13988 |
Illumina HiSeq 2000 (Schizosaccharomyces pombe) |
|
| Samples (22)
|
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| Relations |
| BioProject |
PRJNA282490 |
| SRA |
SRP057746 |
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