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| Status |
Public on Apr 27, 2015 |
| Title |
Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Physiologically relevant concentrations of retinoic acid are added to Mouse ES cells and a time course (0-72 hours) is examined with expression tiling arrays and RNA-seq to characterize the early dynamics of expression of coding and non-coding RNAs in and around the Hox clusters.
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| Overall design |
Gene expression is examined at various timepoints (0-72 hrs) after retinoic acid induced neuronal differentiation
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| Contributor(s) |
De Kumar B, Parrish ME, Slaughter B, Unruh J, Gogol M, Seidel C, Paulson A, Li H, Zueckert-Gaudenz K, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R |
| Citation(s) |
26025802, 28584089 |
| |
| Submission date |
Apr 06, 2015 |
| Last update date |
Jul 03, 2019 |
| Contact name |
Madelaine Gogol |
| Organization name |
Stowers Institute
|
| Department |
Computational Biology Core
|
| Street address |
1000 E. 50th Street
|
| City |
Kansas City |
| State/province |
MO |
| ZIP/Postal code |
64110 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (16)
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| This SubSeries is part of SuperSeries: |
| GSE61590 |
Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters |
|
| Relations |
| BioProject |
PRJNA280456 |
| SRA |
SRP056899 |
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