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Series GSE67610 Query DataSets for GSE67610
Status Public on Apr 27, 2015
Title Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Physiologically relevant concentrations of retinoic acid are added to Mouse ES cells and a time course (0-72 hours) is examined with expression tiling arrays and RNA-seq to characterize the early dynamics of expression of coding and non-coding RNAs in and around the Hox clusters.
Overall design Gene expression is examined at various timepoints (0-72 hrs) after retinoic acid induced neuronal differentiation
Contributor(s) De Kumar B, Parrish ME, Slaughter B, Unruh J, Gogol M, Seidel C, Paulson A, Li H, Zueckert-Gaudenz K, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R
Citation(s) 26025802, 28584089
Submission date Apr 06, 2015
Last update date Jul 03, 2019
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (16)
GSM1651914 Uninduced_ES_1
GSM1651915 Uninduced_ES_2
GSM1651916 4hrs_RA_1
This SubSeries is part of SuperSeries:
GSE61590 Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters
BioProject PRJNA280456
SRA SRP056899

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67610_RAW.tar 18.9 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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