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| Status |
Public on Jul 09, 2015 |
| Title |
Amydala transcriptome changes in germ-free mice |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We sequenced mRNA from 12 samples extracted from mouse amygdala tissue to generate the first amygdala-specific murine transcriptome for germ-free mice (GF), conventionally raised controls (CON) and germ-free mice that have been colonized with normal microbiota from postnatal day 21 (exGF).
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| Overall design |
Equal amounts of RNA from two to three animals were pooled to yield 4 samples per group (CON, GF, and exGF). Pairwise comparisons for CONvsGF, CONvsexGF, GFvsexGF were performed using DESeq2.
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| Contributor(s) |
Stilling RM, Ryan FJ, Hoban AE, Clarke G, Claesson MJ, Cryan JF, Dinan TG |
| Citation(s) |
26184083 |
| |
| Submission date |
Mar 12, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Roman M Stilling |
| E-mail(s) |
roman.stilling@gmail.com
|
| Organization name |
University College Cork
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| Department |
Anatomy and Neuroscience
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| Lab |
Neurogastroenterology
|
| Street address |
Western Road
|
| City |
Cork |
| ZIP/Postal code |
0 |
| Country |
Ireland |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA278050 |
| SRA |
SRP056114 |
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