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Series GSE66828 Query DataSets for GSE66828
Status Public on Jul 09, 2015
Title Amydala transcriptome changes in germ-free mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from 12 samples extracted from mouse amygdala tissue to generate the first amygdala-specific murine transcriptome for germ-free mice (GF), conventionally raised controls (CON) and germ-free mice that have been colonized with normal microbiota from postnatal day 21 (exGF).
Overall design Equal amounts of RNA from two to three animals were pooled to yield 4 samples per group (CON, GF, and exGF). Pairwise comparisons for CONvsGF, CONvsexGF, GFvsexGF were performed using DESeq2.
Contributor(s) Stilling RM, Ryan FJ, Hoban AE, Clarke G, Claesson MJ, Cryan JF, Dinan TG
Citation(s) 26184083
Submission date Mar 12, 2015
Last update date May 15, 2019
Contact name Roman M Stilling
Organization name University College Cork
Department Anatomy and Neuroscience
Lab Neurogastroenterology
Street address Western Road
City Cork
ZIP/Postal code 0
Country Ireland
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM1632819 CON1
GSM1632820 CON2
GSM1632821 CON3
BioProject PRJNA278050
SRA SRP056114

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66828_RAW.tar 1.9 Mb (http)(custom) TAR (of TXT)
GSE66828_deseq2_output_all.xlsx 9.9 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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