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Series GSE65444 Query DataSets for GSE65444
Status Public on Oct 21, 2015
Title Expression and transcriptional regulation dynamics of hepatic lincRNAs
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Gene expression in adult male and female mouse liver was assayed by RNA-seq, as part of a study on hepatic lincRNAs.
 
Overall design Total liver RNA was prepared from 12 individual male and 12 individual female mice. Four independent pools, comprised of RNA isolated from 6 individual male or female livers (2 pooled biological replicates for each sex) were then prepared and used for RNA-seq.
 
Contributor(s) Conforto T, Lau-Corona D, Melia T, Waxman DJ
Citation(s) 26459762
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 DK033765 Regulation of Sex Differences in Liver Metabolism BOSTON UNIVERSITY CHARLES RIVER CAMPUS DAVID J WAXMAN
Submission date Jan 29, 2015
Last update date May 15, 2019
Contact name David J. Waxman
E-mail(s) djw@bu.edu
Organization name Boston University
Department Department of Biology and Bioinformatics Program
Street address 5 Cummington Mall
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM1597887 Male total RNA pool 1
GSM1597888 Male total RNA pool 2
GSM1597889 Female total RNA pool 1
This SubSeries is part of SuperSeries:
GSE66140 RNA-Seq analysis of mouse liver lincRNAs
Relations
BioProject PRJNA274014
SRA SRP052976

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65444_G83_differential_expresssion_result_for_GEO_Final.xlsx 1.1 Mb (ftp)(http) XLSX
GSE65444_RAW.tar 1.5 Gb (http)(custom) TAR (of BW)
GSE65444_ucsc_liverLincRNA_exon_final.gtf.gz 238.6 Kb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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