|
| Status |
Public on Feb 09, 2016 |
| Title |
Chimeric RNA profiling demonstrates an association of alveolar rhabdomyosarcoma with specific stages of normal myogenesis |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Total RNA extracted from differentiated mesenchymal stem cells at four time points (T1,T2,T3,T4) and sequenced using Illumina Hi-seq 2000 platform to generate RNA sequencing with 101bp in read length. Nearly 50 million raw reads were yielded from each sample respectively. We used FastQC to confirm the quality of raw fastq sequencing data, and SOAPfuse software to detect fusion transcripts.
|
| |
|
| Overall design |
Discovering fusion genes from muscle differentiated mesenchymal stem cells
|
| |
|
| Contributor(s) |
Qin F, Li H |
| Citation(s) |
26837576, 27799565 |
| |
| Submission date |
Dec 10, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Fujun Qin |
| E-mail(s) |
qinfujun1981@gmail.com
|
| Phone |
434-982-6680
|
| Organization name |
University of Virginia
|
| Department |
Pathology
|
| Lab |
Dr.Hui LI
|
| Street address |
345 Crispell Dr.
|
| City |
Charlottesville |
| State/province |
VA |
| ZIP/Postal code |
22908 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (5)
|
|
| Relations |
| BioProject |
PRJNA269918 |
| SRA |
SRP051023 |
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