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Series GSE63143 Query DataSets for GSE63143
Status Public on Dec 15, 2014
Title RNA-SEQ analysis of E14.5 pooled dorsal root ganglia control samples
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A comparative RNA-SEQ analysis of control total RNA preparations from pooled E14.5 dorsal root ganglia was carried out to determine the performance of the RNAseq reactions at differing concentrations (3ng, 10ng & 30ng in high or low volumes) and concordance among different institutions using the same source of RNA.
Overall design RNA was extracted from E14.5 dorsal root ganglia dissected from wild type C57BL/6J embryos and sequenced using Illumina Hiseq 2500 platform.
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Contributor(s) Southard-Smith EM, Hoshi M, Heinz M, Tycksen E, Jain S
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Submission date Nov 10, 2014
Last update date May 15, 2019
Contact name GUDMAP Developers
Phone +44 131 651 8500
Organization name IGMM MRC Human Genetics Unit
Lab GUDMAP Database Group
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM1542154 E14.5 DRG (10ng, high volume)
GSM1542155 E14.5 DRG (10ng, low volume)
GSM1542156 E14.5 DRG (3ng, high volume)
BioProject PRJNA266809
SRA SRP049667

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63143_RAW.tar 65.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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