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Series GSE62651 Query DataSets for GSE62651
Status Public on Oct 01, 2015
Title Substantial Reprogramming of the Thellungiella salsuginea Transcriptome in Response to UV and Silver Nitrate Challenge
Organism Eutrema salsugineum
Experiment type Expression profiling by array
Summary The transcriptional response of T. salsuginea to UV irradiation and AgNO3 was monitored by microarray analysis. Most transcripts (respectively 70% and 78%) were significantly differentially regulated and a large overlap between the two treatments was observed (54% of total). While core genes of the biosynthesis of aliphatic glucosinolates were repressed, tryptophan and indole glucosinolate biosynthetic genes, as well as defence-related WRKY transcription factors, were consistently upregulated.
 
Overall design Microarray analysis of four biological replicates was conducted with Agilent arrays. Statistically robust differential regulation was observed for the majority of transcripts.
 
Contributor(s) Mucha S, Walther D, Müller T, Hincha DK, Glawischnig E
Citation(s) 26063239
Submission date Oct 23, 2014
Last update date Jan 11, 2016
Contact name Erich Glawischnig
Organization name TU Muenchen
Department Plant Science
Street address Emil-Ramann-Str. 8
City Freising
ZIP/Postal code 85354
Country Germany
 
Platforms (1)
GPL19319 Agilent-065426 Thellungiella_8x60K array
Samples (12)
GSM1530883 not_induced_replicate_1
GSM1530884 not_induced_replicate_2
GSM1530885 not_induced_replicate_3
Relations
BioProject PRJNA264721

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62651_RAW.tar 107.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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