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Series GSE62247 Query DataSets for GSE62247
Status Public on Sep 23, 2015
Title Cell fate determination by ubiquitin-dependent regulation of translation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Metazoan development depends on accurate execution of differentiation programs that allow pluripotent stem cells to adopt specific fates. Differentiation is brought about by global changes to chromatin architecture and transcriptional networks, yet whether other regulatory events support cell fate determination is less well understood. Using human embryonic stem cell and Xenopus models, we identified the vertebrate-specific ubiquitin ligase Cul3KBTBD8 as an essential regulator of neural crest specification. Cul3KBTBD8 monoubiquitylates NOLC1 and its paralog TCOF1, whose mutation underlies the craniofacial disorder Treacher Collins Syndrome that is characterized by a loss of cranial neural crest cells. Ubiquitylation of NOLC1 and TCOF1 drives formation of a platform that connects RNA polymerase I with ribosome modification enzymes, thereby altering the translational program of differentiating cells to support the generation of neural crest cells. We conclude that the dynamic regulation of ribosome function is an important feature of cell fate determination.
 
Overall design Ribosome profiling and mRNA-Seq
 
Contributor(s) Werner A, Iwasaki S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M
Citation(s) 26399832
Submission date Oct 10, 2014
Last update date May 15, 2019
Contact name Shintaro Iwasaki
E-mail(s) shintaro.iwasaki@riken.jp
Organization name RIKEN
Department Cluster for Pioneering Research
Street address S205 Bioscience Bldg. 2-1 Hirosawa
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (46)
GSM1523624 ribo_hES_shControl_replicate1
GSM1523625 ribo_ND1_shControl_replicate1
GSM1523626 ribo_ND3_shControl_replicate1
Relations
BioProject PRJNA263582
SRA SRP048825

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62247_RAW.tar 17.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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