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Series GSE60768 Query DataSets for GSE60768
Status Public on Jun 09, 2015
Title BATSeq of ESC-FCS/ESC-2i/NSC
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single-cell polyadenylation site quantification
Overall design 48 single cells each of murine embryonic stem cells maintained in FCS+LIF medium ("ESC"), embryonic stem cells maintained in serum free, 2i containing medium ("2i") and neural stem cells ("NSC") were sequenced by BATSeq, a single cell transcriptomic protocol for mapping polyadenylation sites in single cells.
Contributor(s) Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano VJ, Steinmetz LM
Citation(s) 26040288
Submission date Aug 26, 2014
Last update date May 15, 2019
Contact name Lars Velten
Organization name CRG
Department Bioinformatics and Genomics
Lab Velten lab
Street address C. Dr. Aiguader 88, P05
City Barcelona
ZIP/Postal code 08003
Country Spain
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (195)
GSM1488074 2i_A1
GSM1488075 2i_A2
GSM1488076 2i_A3
BioProject PRJNA259519
SRA SRP045791

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60768_RAW.tar 7.6 Mb (http)(custom) TAR (of TXT)
GSE60768_TotalGeneCounts.csv.gz 387.7 Kb (ftp)(http) CSV
GSE60768_TotalIsoformCounts.csv.gz 5.0 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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