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Series GSE60538 Query DataSets for GSE60538
Status Public on Aug 05, 2018
Title Sox5 and Sox6 direct a cardiac adaptive response to pressure overload
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Rationale: We previously demonstrated that the transcription factor Sox6 regulates skeletal muscle biology by determining myofiber composition and muscle performance. Although the role of Sox6 and Sox5, its closest paralog, has not been ascertained in the heart, genome-wide association studies linked both Sox5 and Sox6 to cardiovascular disease.
Objective: This study identifies the role of Sox5 and Sox6 in the adult mammalian heart under normal and stress conditions.
Methods and Results: Using Sox5 and Sox6 cardiac-specific and Sox5 conduction system-specific knockout mice, we investigated the role of the two transcription factors in the heart under normal conditions and during cardiac stress. Sox5/6-deficient (DKO) mice displayed blunted cardiac contractility, which was present in Sox5 but not Sox6 single KO mice. DKO mice had a mild reduction in blood pressure, and conduction-specific knockout of Sox5 resulted in a reduced heart rate at baseline. After cardiac pressure overload, DKO mice showed increased lethality compared to control mice and were more prone to develop heart failure. We performed RNA deep sequencing in ventricles from DKO and control mice to identify potential Sox5/6 target genes and found altered expression of genes encoding regulators of calcium handling and cation transporters. Patch-clamping in isolated cardiomyocytes revealed shortened action potential duration in Sox5 KO cells.
Conclusions: Unlike in skeletal muscle, our results suggest Sox5 but not Sox6 to be a major regulator of cardiac function and rhythm. Sox5 is essential to preserve cardiac function under normal conditions by maintaining contractility and to prevent cardiac failure after pressure overload.
 
Overall design Examination of 4 cardiac ventricles per genotype (DKO and control).
 
Contributor(s) Beetz N, Zang T, Sutherland L, Nelson BR, Munshi NV, Bassel-Duby R, Olson EN
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Submission date Aug 20, 2014
Last update date May 15, 2019
Contact name Benjamin Nelson
E-mail(s) benjamin.nelson@utsouthwestern.edu
Organization name UT Southwestern Medical School
Department Molecular Biology
Lab Eric Olson
Street address 6000 Harry Hines Blvd
City Dallas
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM1481807 Ctrl_rep1
GSM1481808 Ctrl_rep2
GSM1481809 Ctrl_rep3
Relations
BioProject PRJNA258502
SRA SRP045626

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60538_CuffDiff-Data_Coding.txt.gz 952.1 Kb (ftp)(http) TXT
GSE60538_CuffDiff-Data_Gene.txt.gz 806.1 Kb (ftp)(http) TXT
GSE60538_CuffDiff-Data_Gene_Sig-and-1_3-fold.txt.gz 26.2 Kb (ftp)(http) TXT
GSE60538_CuffDiff-Data_Isoform.txt.gz 1.5 Mb (ftp)(http) TXT
GSE60538_CuffDiff-Data_TSS.txt.gz 978.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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