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Series GSE60297 Query DataSets for GSE60297
Status Public on Sep 04, 2014
Title Single cell RNA-seq analysis of mature thymic epithelial cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study set out to assay the (polyA+) transcriptomes of single mature (MHCII high) mouse medullary thymic epithelial cells (mTEC).
 
Overall design Following isolation by FACs, the transcriptomes of single mature mTEC was assayed using the Fluidigm C1 microfluidics platform and Illumina RNA-seq.
 
Contributor(s) Sansom SN, Shikama-Dorn N, Zhanybekova S, Nusspaumer G, Macaulay IC, Deadman ME, Heger A, Ponting CP, Hollander GA
Citation(s) 25224068
Submission date Aug 11, 2014
Last update date May 15, 2019
Contact name Stephen Sansom
E-mail(s) stephen.sansom@kennedy.ox.ac.uk
Organization name Kennedy Institute of Rheumatology
Department NDORMS
Lab Sansom
Street address Roosevelt Drive
City Oxford
State/province Oxfordshire
ZIP/Postal code OX3 7FY
Country United Kingdom
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (174)
GSM1470411 mhcIIhi4wk-wildtype-cell_A01
GSM1470412 mhcIIhi4wk-wildtype-cell_A02
GSM1470413 mhcIIhi4wk-wildtype-cell_A03
This SubSeries is part of SuperSeries:
GSE53111 Aire secures the transcription of polycomb marked genes to complete a comprehensive program of promiscuous gene expression in the thymic epithelial cell lineage
Relations
BioProject PRJNA257979
SRA SRP045422

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60297_copy_number.txt.gz 7.0 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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