NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE59619 Query DataSets for GSE59619
Status Public on Jul 22, 2014
Title The transcriptomes for primary panicle in four near-isogenic lines combined of different allele of two major grain length loci GS3 and qGL3 in rice
Organism Oryza sativa
Experiment type Expression profiling by array
Summary To investigate the genetic relationship between two major grain length loci GS3 and qGL3, we developed the near-isogenic lines (NILs), NIL-GS3 (GS3/qGL3), NIL-qgl3 (gs3/qgl3), NIL-GS3/qgl3 (GS3/qgl3) in the background of 93-11 (gs3/qGL3) by crossing and MAS approach.
 
Overall design Four samples was analyzed: three near-isogenic lines (NILs), NIL-GS3 (GS3/qGL3), NIL-qgl3 (gs3/qgl3), NIL-GS3/qgl3 (GS3/qgl3) and their background of 93-11. Every sample had three independed duplications. And the primary panicle with 3-6 cm length from the three NILs and 93-11 were used for RNA preparation and hybrid with Rice Genome OneArray Microarray (Phalanx Biotech Group).
 
Contributor(s) Zhang X, Huang J, Gao X, Lan H, Wang J, Zhang H
Citation(s) 26105598
Submission date Jul 21, 2014
Last update date Aug 09, 2019
Contact name Xiaojun Zhang
E-mail(s) zhangxj@qau.edu.cn
Organization name QAU
Street address Changcheng road No. 700
City Qingdao
State/province Shandong
ZIP/Postal code 266109
Country China
 
Platforms (1)
GPL13702 Phalanx Rice OneArray® v1
Samples (12)
GSM1440586 Panicle_93-11_rep1
GSM1440587 Panicle_93-11_rep2
GSM1440588 Panicle_93-11_rep3
Relations
BioProject PRJNA255773

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59619_RAW.tar 26.3 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap