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Series GSE59288 Query DataSets for GSE59288
Status Public on Aug 12, 2016
Title Disruption of human-specific synaptogenesis program in autism [RNA-seq]
Organisms Pan troglodytes; Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To test the connection between the molecular mechanisms underlying autistic disorder and human cognitive evolution, we analyzed the gene expression changes taking place during prefrontal cortex development in autism patients and healthy controls, as well as non-human primates. We found the genes with expression changes in autism are significantly overlapped with genes showing human-specific developmental profile. A major pattern of the overlapped genes reflects the aberrant acceleration of synaptogenesis and synaptic maturation followed by premature synaptic pruning in the prefrontal cortex of autism patients. This pattern involves the same developmental program that controls human-specific extension of cortical synaptogenesis in healthy individuals. Taken together, these findings shed light on the molecular mechanisms underlying autistic phenotype and provide potential targets for clinical intervention.
 
Overall design Compare the gene expression change in autism and the gene expression specificly changed in human.
 
Contributor(s) Liu X, Han D
Citation(s) 27685936
Submission date Jul 10, 2014
Last update date May 15, 2019
Contact name Xiling Liu
Organization name Partner Institute for Computational Biology
Street address 320 Yue Yang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16809 Illumina HiSeq 2000 (Pan troglodytes)
Samples (73)
GSM1432812 autism-PFC-730d [aut1]
GSM1432813 autism-PFC-1625d [aut2]
GSM1432814 autism-PFC-1825d [aut3]
Relations
BioProject PRJNA254971
SRA SRP044228

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59288_exp_mRNA.txt.gz 2.0 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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