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Series GSE58765 Query DataSets for GSE58765
Status Public on Jun 25, 2014
Title DOCK8 regulates protective immunity by controlling the function and survival of RORγt+ ILCs
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Retinoic-acid receptor-related orphan receptor-γt-positive (RORγt+) innate lymphoid cells (ILCs) produce interleukin (IL)-22 and IL-17, which are critical for protective immunity against enteric pathogens. The molecular mechanism underlying the development and survival of RORγt+ ILCs is not thoroughly understood. Here we show that Dedicator of cytokinesis 8 (DOCK8), a scaffolding protein involved in cytoskeletal rearrangement and cell migration, is essential for the protective immunity against Citrobacter rodentium. A comparative RNA sequencing-based analysis reveals an impaired induction of antimicrobial peptides in the colon of DOCK8-deficient mice, which correlates with high susceptibility to infection and a very low number of IL-22-producing RORγt+ ILCs in their GI tract. Furthermore, DOCK8-deficient RORγt+ ILCs are less responsive to IL-7 mediated signaling, more prone to apoptosis and produce less IL-22 due to a defect in IL-23-mediated STAT3 phosphorylation. Our studies reveal an unsuspected role of DOCK8 for the function, generation and survival of RORγt+ ILCs.
 
Overall design Control and DOCK8 KO mice were infected with 2X109 CFU of Citrobacter rodentium and day 8 post infection mice were sacrificed and their colons were harvested (n=5) . Total RNA was purified from the infected colons with RNeasy mini kit (Qiagen). RNA sequencing was performed (pooled RNA sample from five mice in each group) at Genomic Core Facility Southwestern Medical Center, University of Texas.
 
Contributor(s) Singh AK, Oukka M
Citation(s) 25091235
Submission date Jun 24, 2014
Last update date May 15, 2019
Contact name Akhilesh K Singh
Organization name Seattle Childrens Research Institute
Department Center for Immunity and Immunotherapies
Lab Mohamed Oukka Lab
Street address 1900, 9th AVE
City Seattle
State/province WA
ZIP/Postal code 98101
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (2)
GSM1419170 WT Control
GSM1419171 DOCK8 KO
Relations
BioProject PRJNA253372
SRA SRP043526

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58765_DOCK8_RNA-SEQ_RPKM.txt.gz 313.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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