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Series GSE55370 Query DataSets for GSE55370
Status Public on Oct 24, 2014
Title In vivo proximity labeling and sequencing (IPL-seq) for SNRPN70 in 293T-Rex
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary This proof-of-principle experiment was designed to demonstrate the feasibility of proximity labeling for RNA–protein interactions
 
Overall design IPL-seq on 293T-Rex expressing MSA-SNRPN70 (sample) or NFH-SNRPN70 (control)
 
Contributor(s) Bonasio R, Beck D, Narendra V
Citation(s) 25311790
Submission date Feb 26, 2014
Last update date Feb 04, 2022
Contact name Roberto Bonasio
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Bonasio
Street address 3400 Civic Center Blvd - SCTR 9-111
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM1334897 293Trex_MSA-SNRNP70.input
GSM1334898 293Trex_MSA-SNRNP70.IPL
GSM1334899 293Trex_NFH-SNRNP70.input
Relations
BioProject PRJNA239426
SRA SRP038969

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55370_293Trex.RPKM.ENS65.txt.gz 1.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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