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Series GSE55291 Query DataSets for GSE55291
Status Public on Jan 12, 2015
Title Noncoding RNA transcriptome analysis during cellular reprogramming
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary We report the application of single-cell and bulk RNA sequencing technology to examine the noncoding transcriptome of cells undergoing reprogramming to the pluripotent state.
Overall design Examination of noncoding RNAs in reprogrammming cells. We examined iPS cells grown in standard ES cell culture conditions, as well as iPS cells grown in "2i" conditions (small molecule inhibition of Mek and Gsk3). We also compared our iPS samples to male and female ES cells (mES, fES).
Contributor(s) Kim D, Marinov G
Citation(s) 25575081
Submission date Feb 24, 2014
Last update date May 15, 2019
Contact name Diane E Trout
Organization name California Institute of Technology
Department Biology
Lab Wold
Street address 1200 E California Blvd M/C 156-29
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (95)
GSM1333674 iPS 1
GSM1333675 iPS 2
GSM1333676 iPS 3
BioProject PRJNA239218
SRA SRP038871

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55291_RAW.tar 85.8 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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