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Series GSE55215 Query DataSets for GSE55215
Status Public on Apr 14, 2014
Title Genomewide analysis of QKI-dependent alternative splicing
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To identify QKI targets, we performed QKI knockdown in BEAS2B cells and analyzed alternative splicing patterns by high-throughput RNA sequencing.
Overall design The mRNA profiles of control- and QKI-knockdown BEAS2B cells were generated by deep sequencing using Illumina GAIIx sequencer.
Contributor(s) Fu X, Zong F, Hui J
Citation(s) 24722255
Submission date Feb 20, 2014
Last update date May 15, 2019
Contact name Jingyi Hui
Organization name Shanghai Institutes for Biological Sciences
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (4)
GSM1331665 sh-Ctrl rep1
GSM1331666 sh-Ctrl rep2
GSM1331667 sh-QKI rep1
BioProject PRJNA238897
SRA SRP038702

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55215_RAW.tar 1000.0 Kb (http)(custom) TAR (of RPKM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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