NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE55132 Query DataSets for GSE55132
Status Public on Feb 19, 2014
Title Evaluation of chronic sublethal effects effects of the organophosphate flame retardant Tris(2-butoxyethyl)phosphate (TBEP) using Daphni magna transcriptomic response
Organism Daphnia magna
Experiment type Expression profiling by array
Summary The aim of this study was to measure chronic sublethal effects of the flame retardant Tris(2-butoxyethyl)phosphate (TBEP) on gene expression, associated protein activity and life-history endpoints (reproduction, development) in the freshwater crustacean Daphnia magna. We exposed <24h old D. magna neonates for 21 days to culture medium (control) and to 3 sublethal doses of TBEP: 14.7, 147 and 1470 µg/L. Exposure doses were chosen from 48h acute toxicity testing and represent 1/10000, 1/1000 and 1/100 of the LC50, respectively. Each condition (control and the 3 different doses) were performed on 3 independant biological replicates, with 10 individuals each. We used a custom 15000 sequences D. magna microarray to measure transcriptional effect of each of the TBEP doses in comparison to unexposed controls.
 
Overall design We exposed <24h old Daphnia magna to culture medium (unexposed controls) and 3 sublethal doses of TBEP (14.7µg/L, 147µg/L and 1470µg/L) for 21 days. We used 3 biological replicates of 10 individuals for each condition.
 
Contributor(s) Giraudo M, Douville M, Houde M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 18, 2014
Last update date Feb 20, 2014
Contact name Maeva Giraudo
E-mail(s) maeva.giraudo@gmail.com
Phone 514-283-5036
Organization name Environment Canada
Department Water Science and Technology Directorate
Lab Aquatic Contaminants Research Division
Street address 105 McGill street
City Montreal
State/province Quebec
ZIP/Postal code H2Y 2E7
Country Canada
 
Platforms (1)
GPL18298 Agilent-023710 Daphnia magna (probe name version)
Samples (12)
GSM1329941 TBEP_ctrl_rep1
GSM1329942 TBEP_ctrl_rep2
GSM1329943 TBEP_ctrl_rep3
Relations
BioProject PRJNA238590

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55132_RAW.tar 8.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap