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Series GSE54336 Query DataSets for GSE54336
Status Public on Apr 09, 2014
Title Expression data of A2EN cells during early stage of Chlamydia trachomatis infection
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Chlamydia trachomatis is an obligate intracellular pathogen that causes trachoma and sextually transmitted disease in human. During early stage of infection, Chlamydia secreted bacterial effector proteins into host cell cytoplasm to help its entry and estabilishment of early replicated niche.
We identified a Chlamydia mutant that lack an early Effector. To address the function of this effector, we infected A2EN cells with this mutant (G1V) and its complemented counterpart (G1TEPP) to see what host gene transcriptions are affected by this effector.
 
Overall design A2EN cells were mock infected, or infected with a Chlamydia mutant or its complemented counterpart for 4 hour post infection.
 
Contributor(s) Carpenter VK, Chen Y
Citation(s) 24586162
Submission date Jan 23, 2014
Last update date Dec 06, 2018
Contact name Raphael H Valdivia
E-mail(s) raphael.valdivia@duke.edu
Phone 9196683831
Organization name Duke University
Department Molecular Genetics and Microbiology
Lab Valdivia
Street address 207 Research drive, Jones bldg 272
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platforms (1)
GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array
Samples (6)
GSM1313408 A2EN cells_Chlamydia G1TEPP_4h_rep1
GSM1313409 A2EN cells_Chlamydia G1TEPP_4h_rep2
GSM1313410 A2EN cells_Chlamydia G1V_4h_rep1
Relations
BioProject PRJNA236228

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54336_RAW.tar 12.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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