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Series GSE54159 Query DataSets for GSE54159
Status Public on Feb 05, 2014
Title Transcriptome sequencing of nasopharyngeal carcinoma model system (mRNA)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Nasopharyngeal carcinoma (NPC) is a prevalent malignancyt disease in Southeast Asia among the Chinese population. Aberrant regulation of transcripts has been implicated in many types of cancers including NPC. Herein, we characterized mRNA and miRNA transcriptomes by RNA sequencing (RNASeq) of NPC model systems.
Overall design Matched total mRNA and small RNA of undifferentiated Epstein-Barr virus (EBV)-positive NPC xenograft X666 and its derived cell line C666, well-differentiated NPC cell line HK1, and the immortalized nasopharyngeal epithelial cell line NP460 have been sequenced by Solexa technology.
Contributor(s) Szeto CY, Lung ML, Lin CH, Choi SC, Yip TT, Ngan RK, Tsao GS
Citation(s) 24490137
Submission date Jan 16, 2014
Last update date May 15, 2019
Contact name Chi Ho Lin
Phone +852 2831 5511
Organization name The University of Hong Kong
Department Centre for PanorOmic Sciences
Street address 6th Floor, The Hong Kong Jockey Club Building for Interdisciplinary Research, 5 Sassoon Road, Pokfulam
City Hong Kong
ZIP/Postal code Hong Kong
Country Hong Kong
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (4)
GSM1308991 C666 (mRNA)
GSM1308992 X666 (mRNA)
GSM1308993 HK1 (mRNA)
This SubSeries is part of SuperSeries:
GSE54174 Transcriptome sequencing of nasopharyngeal carcinoma model system
BioProject PRJNA235326
SRA SRP035477

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54159_RAW.tar 250.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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