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Series GSE54004 Query DataSets for GSE54004
Status Public on Feb 13, 2014
Title Gene expression data from malignant gliomas
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Formalin-fixed, paraffin-embedded (FFPE) samples of varying grade (II-IV) malignant gliomas were measured by Illumina cDNA-mediated Annealing, Selection, extension and ligration (DASL) platform.
DASL platform was selected for its specialized design for partially degraded RNA.
 
Overall design Overall mRNA was extracted from FFPE samples using the GoldenGate Assay protocol and hybridized to Illumina BeadChips.
 
Contributor(s) deGroot J, Verhaak R
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Submission date Jan 12, 2014
Last update date Feb 13, 2014
Contact name Roel G.W. Verhaak
E-mail(s) rverhaak@mdanderson.org
Organization name UT MD Anderson Cancer Center
Street address 1400 Pressler street
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL18281 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip [gene symbol version]
Samples (144)
GSM1326885 Degroot_1_Plate209
GSM1326886 Degroot_2_Plate209
GSM1326887 Degroot_3_Plate209
Relations
BioProject PRJNA238077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54004_non-normalized.txt.gz 13.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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