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Series GSE53627 Query DataSets for GSE53627
Status Public on Dec 24, 2013
Title Disruption of H3K27me3 through loss of EZH1 and EZH2 accelerates progression of hepatosteatosis to fatal liver fibrosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Although epigenetic mechanisms, such as specific histone modifications, control common and cell-specific genetic programs, a role for histone modifying enzymes in liver metabolism and disease has not been investigated. This report demonstrates that the combined loss of the histone methyltransferases EZH1 and EZH2 in mouse hepatocytes led to the disruption of H3K27me3 homeostasis by age three months, simple fatty liver by age six months and fatal fibrosis by age 15 months. Global and gene-specific reduction of H3K27me3 marks paralleled a concomitant increase of H3K4me3 marks at genes associated with chronic liver disease. Advanced disease was accompanied by widespread infiltration of immune cells, an increase of activated hepatic stellate cells and collagen deposition. Expression of genes from the cytochrome P450 family that control drug metabolism was already deregulated by age two months and mice were fatally hypersensitive to carbon tetrachloride (CCl4). These genetic experiments, for the first time, illustrate that the simple loss of EZH1/EZH2, which results in the disruption of epigenetic modifications, is sufficient for the progression of fatal liver disease.
 
Overall design RNA-seq and ChIP-seq were performed in liver tissues.
 
Contributor(s) Bae WK, Kang K, Yu JH, Yoo KH, Hennighausen L
Citation(s) 25477280
Submission date Dec 23, 2013
Last update date May 15, 2019
Contact name Keunsoo Kang
E-mail(s) kangk1204@gmail.com
Phone 82-41-550-3456
Organization name Dankook University
Department Microbiology
Lab Computational Biology Lab
Street address Dandae-ro 119
City Cheonan
State/province Chungnam
ZIP/Postal code 31116
Country South Korea
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (21)
GSM1297314 2m_WT_RNA-seq_rep1-3
GSM1297315 2m_E1KO_RNA-seq_rep1-3
GSM1297316 2m_E2KO_RNA-seq_rep1-3
Relations
BioProject PRJNA232495
SRA SRP034703

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53627_2m_8m_3m_FPKM.txt.gz 491.0 Kb (ftp)(http) TXT
GSE53627_RAW.tar 596.7 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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